Issues

• Group-local service job has no consumer in cluster mode when the consumers have wildcards

  snakemake/snakemake#4329 · Filter by author ZacKienzle2 opened on Sep 29, 2026

• Can we revert the preamble changes in #4032 instead of the docs change in #4193?

  snakemake/snakemake#4323 · Filter by author Hugovdberg opened on Sep 23, 2026

• Output a summary of all input and output files (or patterns) referred to by a workflow

  enhancement
  snakemake/snakemake#4321 · Filter by author tomalrussell opened on Sep 22, 2026
  4

• Importing parse breaks module import

  bug
  snakemake/snakemake#4320 · Filter by author mschilli87 opened on Sep 20, 2026
  3

• Outdated description of conda environment naming

  bugdocumentationgood first issue
  snakemake/snakemake#4319 · Filter by author jonasfreimuth opened on Sep 18, 2026
  4

• Minio not available on dockerhub, switch to silo

  bug
  snakemake/snakemake#4316 · Filter by author hwalinga opened on Sep 17, 2026

• unpacking a checkpoint gives AttributeError: 'InputFiles' object has no attribute ... in params function

  bug
  snakemake/snakemake#4312 · Filter by author nikostr opened on Sep 9, 2026

• Publishing snakemake-software-deployment plugin for EESSI

  snakemake/snakemake#4304 · Filter by author dagonzalezfo opened on Sep 2, 2026

• config KeyError for unused rules

  enhancement
  snakemake/snakemake#4303 · Filter by author LukaP-BB opened on Sep 1, 2026

• --target-jobs removes literal quotes from wildcard value boundaries

  bug
  snakemake/snakemake#4298 · Filter by author Maharshi-Pathak opened on Aug 28, 2026

• Estimate energy consumption and CO2 emissions of workflow runs

  enhancement
  snakemake/snakemake#4295 · Filter by author vsuppiyar opened on Aug 26, 2026

• Include parameter values in dry run output.

  enhancement
  snakemake/snakemake#4290 · Filter by author mschilli87 opened on Aug 24, 2026

• Usage of old wrapers leading to TypeError for snakemake > 9.17.3

  bug
  snakemake/snakemake#4287 · Filter by author gernophil opened on Aug 22, 2026
  1

• RuntimeWarning: coroutine 'InputFiles._predicated_size_files.<locals>.sizes' was never awaited

  bug
  snakemake/snakemake#4280 · Filter by author alxsimon opened on Aug 17, 2026

• Raise an error, if a --workflow-profile directory does not exist

  enhancement
  snakemake/snakemake#4276 · Filter by author cmeesters opened on Aug 13, 2026
  

• workdir keyword is not properly working

  bug
  snakemake/snakemake#4271 · Filter by author reJELIN opened on Aug 7, 2026

• force() flag as opposite to ancient()

  enhancement
  snakemake/snakemake#4254 · Filter by author wiedenhoeft opened on Jul 23, 2026

• Logging error with groups - KeyError: 'name'

  bug
  snakemake/snakemake#4248 · Filter by author AndrewLister-STFC opened on Jul 16, 2026
  3

• kernel directive to specify notebook kernel

  enhancement
  snakemake/snakemake#4243 · Filter by author pdimens opened on Jul 10, 2026

• Allow notebook directive to save copy as output

  enhancement
  snakemake/snakemake#4242 · Filter by author pdimens opened on Jul 10, 2026

• Slow job scheduling on high-latency filesystems

  snakemake/snakemake#4240 · Filter by author gipert opened on Jul 9, 2026
  5

• Overwriting a rule from a module messes up the workflow

  bug
  snakemake/snakemake#4238 · Filter by author lamyj opened on Jul 3, 2026
  1

• Notebooks paths are made absolute and cannot be linked to upstream rules anymore

  bug
  snakemake/snakemake#4236 · Filter by author raffienficiaud opened on Jun 22, 2026
  1

• --print-compilation ignores SyntaxErrors

  bug
  snakemake/snakemake#4235 · Filter by author schnea opened on Jun 19, 2026
  1

• Unexpected interaction between local() inputs, Slurm execution, and FS staging

  bug
  snakemake/snakemake#4233 · Filter by author jmzhang1911 opened on Jun 18, 2026