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EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

67 followers
https://www.ebi.ac.uk/spot/

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efo efo Public

Github repo for the Experimental Factor Ontology (EFO)

Python 64 15
DUO DUO Public

Ontology for consent codes and data use requirements

Makefile 70 17
CMPO CMPO Public

Cellular Microscopy Phenotype Ontology

Python 6 2
ols4 ols4 Public

The EMBL-EBI Ontology Lookup Service (OLS)

Java 96 43

Repositories

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Showing 10 of 83 repositories

oxo2 Public
A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

EBISPOT/oxo2’s past year of commit activity

Java 1 Apache-2.0 0 0 8 Updated Jul 14, 2026
efo Public
Github repo for the Experimental Factor Ontology (EFO)

EBISPOT/efo’s past year of commit activity

Python 64 15 194 (2 issues need help) 11 Updated Jul 14, 2026
owlmake Public

EBISPOT/owlmake’s past year of commit activity

Rust 1 Apache-2.0 0 0 0 Updated Jul 13, 2026
ols4 Public
The EMBL-EBI Ontology Lookup Service (OLS)

EBISPOT/ols4’s past year of commit activity

Java 96 Apache-2.0 43 98 (1 issue needs help) 13 Updated Jul 10, 2026
GrEBI Public
HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

EBISPOT/GrEBI’s past year of commit activity

Jupyter Notebook 4 Apache-2.0 4 17 0 Updated Jul 10, 2026
cohort-ontology Public
A lightweight ontology for consistent identification and description of human cohorts. It defines a unique cohort identifier with minimal metadata, enabling linkage, discovery, and integration of cohort-related data while supporting both named and implicitly defined cohorts.

EBISPOT/cohort-ontology’s past year of commit activity

Makefile 3 CC0-1.0 0 1 1 Updated Jul 10, 2026
gwas-beyond-snps Public
Supporting new types of genetic variation in the GWAS Catalog

EBISPOT/gwas-beyond-snps’s past year of commit activity

Python 1 Apache-2.0 0 0 0 Updated Jul 9, 2026
gwas-top-hits Public
Tools for submitting top associations to the GWAS Catalog

EBISPOT/gwas-top-hits’s past year of commit activity

Python 0 Apache-2.0 0 5 1 Updated Jul 9, 2026
gwas-sumstats-tools Public
A toolkit for processing, validating, and formatting GWAS (Genome-Wide Association Studies) summary statistics files for submission to the GWAS Catalog.

EBISPOT/gwas-sumstats-tools’s past year of commit activity

Python 14 Apache-2.0 2 4 5 Updated Jul 8, 2026
environmental-exposure-ontology Public Forked from EnvironmentOntology/environmental-exposure-ontology
Modular environmental exposures ontology

EBISPOT/environmental-exposure-ontology’s past year of commit activity

Makefile 0 21 0 1 Updated Jul 7, 2026

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