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perf(reaction): stop generating 3D conformers just to count atoms (59x); allow execute_command to time out - #1003

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alongd wants to merge 2 commits into
mainfrom
atom-balance-perf
Open

alongd wants to merge 2 commits into
mainfrom
atom-balance-perf

Make execute_command() able to time out and kill the whole process tree

2a5c457
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Codecov / codecov/project succeeded Aug 31, 2026 in 0s

65.53% (+0.01%) compared to ea8f3c2

View this Pull Request on Codecov

65.53% (+0.01%) compared to ea8f3c2

Details

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 65.53%. Comparing base (ea8f3c2) to head (2a5c457).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1003      +/-   ##
==========================================
+ Coverage   65.52%   65.53%   +0.01%     
==========================================
  Files         120      120              
  Lines       40468    40523      +55     
  Branches    10430    10437       +7     
==========================================
+ Hits        26515    26556      +41     
- Misses      10948    10963      +15     
+ Partials     3005     3004       -1     

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