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Fiji

A "batteries included" distribution of ImageJ for scientific image analysis
README.md

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  1. fiji fiji Public

    A "batteries-included" distribution of ImageJ 🔋

    Shell 1k 259

  2. fiji.github.io fiji.github.io Public

    Fiji website

    HTML 37 10

  3. cookbook cookbook Public

    Plugins collated for the Fiji Cookbook

    Java 27 6

Repositories

Showing 10 of 157 repositories
  • fiji-llm Public

    LLM chatbot integration in Fiji

    fiji/fiji-llm's past year of commit activity
    Java 19 BSD-2-Clause 3 33 1 Updated Oct 26, 2026
  • weave_jy2java Public

    A framework for inlining java code in an otherwise interpreted programming language running on the JVM, such as jython. See https://github.com/fiji/fiji/issues/161

    fiji/weave_jy2java's past year of commit activity
    Java 1 0 2 0 Updated Oct 24, 2026
  • registration_3d Public
    fiji/registration_3d's past year of commit activity
    Java 1 1 0 0 Updated Oct 24, 2026
  • register_virtual_stack_slices Public

    Fiji package for registering and transforming arbitrarily large sequences of images

    fiji/register_virtual_stack_slices's past year of commit activity
    Java 19 GPL-3.0 14 8 1 Updated Oct 24, 2026
  • panorama Public
    fiji/panorama's past year of commit activity
    Java 2 4 1 0 Updated Oct 24, 2026
  • pal-optimization Public
    fiji/pal-optimization's past year of commit activity
    Java 0 0 0 0 Updated Oct 24, 2026
  • pQCT Public

    Fiji plugins for pQCT image analysis.

    fiji/pQCT's past year of commit activity
    Java 3 BSD-2-Clause 5 0 0 Updated Oct 24, 2026
  • microscope-image-quality Public

    TensorFlow-based classifier for microscope image focus quality.

    fiji/microscope-image-quality's past year of commit activity
    Java 19 Apache-2.0 2 1 0 Updated Oct 24, 2026
  • level_sets Public
    fiji/level_sets's past year of commit activity
    Java 4 3 0 0 Updated Oct 24, 2026
  • legacy-imglib1 Public

    OBSOLETE; see https://github.com/imglib/imglib2

    fiji/legacy-imglib1's past year of commit activity
    Java 1 1 0 0 Updated Oct 24, 2026
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