Issues

• nextflow-to-galaxy: emit a Nextflow-vs-Galaxy divergence report at the end of the run

  BioHackEU26needs-triage
  galaxyproject/foundry#784 · Filter by author mariaTsontaki opened on Nov 10, 2026
  1

• Coverage of existing FAIR assessors on IWC workflows (task 1): work/human, good first issue, no LLM required

  BioHackEU26needs-triage
  galaxyproject/foundry#783 · Filter by author nsoranzo opened on Nov 10, 2026
  1

• Check Galaxy step state against the nf-core ext.args that summarize-nextflow captures (#777)

  BioHackEU26needs-triage
  galaxyproject/foundry#781 · Filter by author arash77 opened on Nov 10, 2026

• Template frames lack step positions, breaking workflow save in Galaxy and workflow diagram

  BioHackEU26needs-triage
  galaxyproject/foundry#776 · Filter by author mariaTsontaki opened on Nov 10, 2026
  1

• IWC corpus survey of FAIR metadata coverage

  BioHackEU26good first issueneeds-triageroadmap/substep
  galaxyproject/foundry#774 · Filter by author nsoranzo opened on Nov 10, 2026
  1

• summarize-nextflow: processes with only a container directive get no tool, and a container directive with no space is dropped

  BioHackEU26needs-triage
  galaxyproject/foundry#772 · Filter by author AnnaSyme opened on Nov 10, 2026

• summarize-nextflow reads only $defs, so a draft-07 nextflow_schema.json gives params: [] and sample_sheets: []

  BioHackEU26needs-triage
  galaxyproject/foundry#771 · Filter by author AnnaSyme opened on Nov 10, 2026

• report-foundry-run-feedback: fact-check draft claims, and a missed duplicate

  BioHackEU26needs-triage
  galaxyproject/foundry#770 · Filter by author AnnaSyme opened on Nov 10, 2026

• Direct nextflow-to-galaxy route: confirm scope at the start, or point the user to Plan & Build

  BioHackEU26needs-triage
  galaxyproject/foundry#769 · Filter by author AnnaSyme opened on Nov 10, 2026

• FAIRness review for Galaxy workflows: a checklist, a review Mold, and Galaxy integration

  BioHackEU26enhancementneeds-triagepriority/v2roadmap/main
  galaxyproject/foundry#768 · Filter by author nsoranzo opened on Nov 10, 2026
  4

• nextflow-snapshot-to-galaxy-assertions: nf-test md5 of *.gz is over decompressed content

  BioHackEU26needs-triage
  galaxyproject/foundry#764 · Filter by author arash77 opened on Nov 9, 2026

• summarize-nextflow --profile silently defaults to "test", hiding that nf-test.config 'profile = "test"' is not read

  BioHackEU26needs-triage
  galaxyproject/foundry#763 · Filter by author arash77 opened on Nov 9, 2026
  1

• summarize-nextflow splits a multi-line closure argument into one bogus edge per line

  BioHackEU26needs-triage
  galaxyproject/foundry#762 · Filter by author arash77 opened on Nov 9, 2026
  1

• summarize-nextflow fails on a Nextflow-managed clone: local bare-repo origin breaks source.url

  BioHackEU26needs-triage
  galaxyproject/foundry#761 · Filter by author arash77 opened on Nov 9, 2026

• Turn Foundry Notes into Training Materials

  BioHackEU26documentationgood first issueneeds-triageroadmap/offwork/human
  galaxyproject/foundry#760 · Filter by author jmchilton opened on Nov 9, 2026
  2

• Foundry pages say Galaxy when cannot act per element, but a mapped gate can

  documentationpriority/mvproadmap/offwork/ready-implement
  galaxyproject/foundry#758 · Filter by author jmchilton opened on Nov 7, 2026

• Channel-shape note has no route for per-element parameters computed from meta

  documentationpriority/mvproadmap/offwork/in-progress
  galaxyproject/foundry#757 · Filter by author jmchilton opened on Nov 7, 2026
  1

• Bind abstract find-test-data and implement-galaxy-workflow-test scenarios to real fixtures

  needs-triagework/ready-implement
  galaxyproject/foundry#751 · Filter by author jmchilton opened on Nov 6, 2026

• Establish sample_sheet Collection Examples

  good first issueneeds-triageno-agent-required
  galaxyproject/foundry#744 · Filter by author jmchilton opened on Nov 3, 2026

• Establish list:paired_or_unpaired Collection Examples

  good first issueneeds-triageno-agent-requiredroadmap/offwork/human
  galaxyproject/foundry#743 · Filter by author jmchilton opened on Nov 3, 2026
  1

• Find shit to delete and make the case we should delete it

  documentationenhancementgood first issueneeds-triage
  galaxyproject/foundry#742 · Filter by author jmchilton opened on Nov 3, 2026

• Embedded Help in VS Code

  good first issueneeds-triageno-agent-required
  galaxyproject/foundry#741 · Filter by author jmchilton opened on Nov 3, 2026

• Beautiful Pattern Pages

  good first issueneeds-triageno-agent-required
  galaxyproject/foundry#740 · Filter by author jmchilton opened on Nov 3, 2026
  1

• Test-data Molds stage data tables in a form planemo doesn't auto-discover

  priority/mvproadmap/offwork/in-progress
  galaxyproject/foundry#735 · Filter by author jmchilton opened on Oct 27, 2026
  1

• run-workflow-test / planemo architecture note: no guidance for UDT-embedding workflows or data-table inputs

  priority/mvproadmap/offwork/in-progress
  galaxyproject/foundry#730 · Filter by author jmchilton opened on Oct 26, 2026