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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 4 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python 1

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 13 3

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 5

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 6

Repositories

Showing 10 of 199 repositories
  • hra-kg Public

    Human Reference Atlas Knowledge Graph

    hubmapconsortium/hra-kg's past year of commit activity
    Mermaid 4 MIT 1 14 0 Updated Sep 17, 2026
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools's past year of commit activity
    Python 9 MIT 18 39 6 Updated Sep 17, 2026
  • data-containers Public

    Code for building and manipulating data containers like RO-Crate, Croissant, etc.

    hubmapconsortium/data-containers's past year of commit activity
    Python 0 MIT 0 0 1 Updated Sep 17, 2026
  • documentation Public

    General Documentation For HuBMAP

    hubmapconsortium/documentation's past year of commit activity
    Python 0 1 8 0 Updated Sep 17, 2026
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui's past year of commit activity
    TypeScript 13 MIT 3 173 9 Updated Sep 17, 2026
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline's past year of commit activity
    Python 4 MIT 6 79 6 Updated Sep 16, 2026
  • salmon-rnaseq Public

    scRNA-seq pipeline using Salmon for quantification

    hubmapconsortium/salmon-rnaseq's past year of commit activity
    Python 4 GPL-3.0 6 7 6 Updated Sep 16, 2026
  • ingest-api Public

    HuBMAP Data Ingest API

    hubmapconsortium/ingest-api's past year of commit activity
    Python 0 MIT 0 12 1 Updated Sep 16, 2026
  • ccf-validation-tools Public

    HRA ASCT+B Validation Reports

    hubmapconsortium/ccf-validation-tools's past year of commit activity
    Python 6 Apache-2.0 1 5 3 Updated Sep 16, 2026
  • hra-workflows Public

    hra-workflows: HRA workflows for processing experimental data via the DCTA

    hubmapconsortium/hra-workflows's past year of commit activity
    Python 0 MIT 1 1 0 Updated Sep 14, 2026
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