Add signature reversal tutorial section - #73
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Zethson merged 3 commits intoAug 30, 2026
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It should also be executed, please so that the output is rendered. |
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Done, thanks! |
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Looks nice! Thank you |
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Now that scverse/pertpy#1082 has been merged, would this tutorial PR be ready to merge as well? |
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Oh whops. I should have merged this one first and then updated the submodule pointer. My bad. I'll take care of this. Thanks! |
Zethson
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Pulls in scverse/pertpy-tutorials#75 (the `pt.dt` -> `pt.ds` rename) and scverse/pertpy-tutorials#73 (the signature reversal section).
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Zethson
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* Prefer `pt.ds` over `pt.dt` for datasets `ds` reads as "datasets" whereas `dt` was easily mistaken for "data" or "datetime". The dataset module is now exposed as both `pt.ds` and `pt.dt`, with all docstrings, tests and docs switched to `pt.ds`. `pt.dt` keeps working unchanged and without a deprecation warning, so no user code breaks. The prek mypy hook cannot spawn `mypy` in this checkout, so mypy was run separately against the project interpreter and passes. * Bump the tutorials to the `pt.ds` notebooks Pulls in scverse/pertpy-tutorials#75 (the `pt.dt` -> `pt.ds` rename) and scverse/pertpy-tutorials#73 (the signature reversal section). * Drop the datasets accessor note * Drop the alias test * Rename the merged enrichment example to `pt.ds` * Drop the alias comment
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Companion tutorial update for scverse/pertpy#1082.
Adds the small signature reversal section discussed there, using
distance_example()with the required preprocessing and a Scanpy matrix plot.