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17 changes: 17 additions & 0 deletions docs/changelog.md
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Expand Up @@ -4,6 +4,23 @@ All notable changes to this project will be documented in this file.

The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v1.3.0

### 🚀 Features

* Make JAX optional and reimplement scGen without scvi-tools ([#1084](https://github.com/scverse/pertpy/pull/1084)) @Zethson

### 🐛 Bug Fixes

* Raise a clear error when a `da_nhoods` design has no residual degrees of freedom ([#1077](https://github.com/scverse/pertpy/pull/1077)) @Zethson
* Drop empty annotation rows from `plot_da_beeswarm()` ([#1078](https://github.com/scverse/pertpy/pull/1078)) @Zethson
* Keep permutation p-values aligned with their group labels in `DistanceTest` ([#1079](https://github.com/scverse/pertpy/pull/1079)) @Zethson
* Ensure right fit object is in R scope ([#1073](https://github.com/scverse/pertpy/pull/1073)) @sagar87, @Zethson

### 🧰 Maintenance

* Read the Lightning intersphinx inventory from Read the Docs ([#1083](https://github.com/scverse/pertpy/pull/1083)) @Zethson

## v1.2.0

### 🚀 Features
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