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Feat: Asymmetric n_layers for encoder/decoder - #3702

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Ori-3698-assymetric-n_layers_encoder_decoder
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ori-kron-wis wants to merge 5 commits into
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Ori-3698-assymetric-n_layers_encoder_decoder

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close #3698

@ori-kron-wis ori-kron-wis self-assigned this Feb 8, 2026
@ori-kron-wis ori-kron-wis added the on-merge: backport to 1.4.x on-merge: backport to 1.4.x label Feb 8, 2026
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codecov Bot commented Feb 8, 2026 •

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 74.67%. Comparing base (3507d79) to head (3b5de79).

Additional details and impacted files
@@             Coverage Diff             @@
##             main    #3702       +/-   ##
===========================================
- Coverage   88.58%   74.67%   -13.91%     
===========================================
  Files         241      241               
  Lines       23744    23744               
===========================================
- Hits        21033    17732     -3301     
- Misses       2711     6012     +3301     
Flag Coverage Δ
autotune ?
cuda ?
custom_dataloader ?
integration 74.67% <100.00%> (+<0.01%) ⬆️
internet ?
macos ?
mlflow ?
optional ?
private ?
resolution ?
windows ?

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/scvi/module/_vae.py 96.61% <100.00%> (-0.30%) ⬇️

... and 78 files with indirect coverage changes

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Only VAE has this change for now

@ori-kron-wis ori-kron-wis changed the title Feat: Asymmetric n_layers for endoder/decoder Feat: Asymmetric n_layers for encoder/decoder Feb 26, 2026
@ori-kron-wis ori-kron-wis added on-merge: backport to 1.5.x on-merge: backport to 1.5.x and removed on-merge: backport to 1.4.x on-merge: backport to 1.4.x labels Jul 7, 2026

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[Bug/Feature] Asymmetric n_layers for encoder and decoder.

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