Skip to content

Pull requests: scverse/scvi-tools

New pull request New
17 Open 2,799 Closed
17 Open 2,799 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Honor TOTALVI protein capture efficiency in public readout
#4023 opened Sep 17, 2026 by shaneraphel Loading…
3 tasks
1
[pre-commit.ci] pre-commit autoupdate on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#4021 opened Sep 14, 2026 by pre-commit-ci Bot Loading…
1
feat: Extract some methods of DRVI for easier extention + code improvement
#4020 opened Sep 14, 2026 by moinfar Contributor Loading…
1
feat: FCLayers residual and forward kwargs
#4019 opened Sep 14, 2026 by moinfar Contributor Loading…
1
perf: sample cells before the forward pass in get_normalized_expression(n_samples_overall=...)
#4018 opened Sep 14, 2026 by JESUSROYETH Loading…
perf: remove per-minibatch overhead from the data path and the inference forward on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#4017 opened Sep 13, 2026 by JESUSROYETH Loading…
2
build: drop Python 3.12 support, add Python 3.15 support on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3997 opened Sep 6, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
4
Refactor [WIP]: Removed the spatial models from scvi-tools in v1.6 and move them to scVIVA-Tools cuda tests Run test suite on CUDA on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3908 opened Jul 9, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
3
feat: supporting sparse mode in DataSplitter cuda tests Run test suite on CUDA on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3840 opened Jun 11, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
4
feat: scvix reformat on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3827 opened May 28, 2026 by ori-kron-wis Collaborator Loading…
@ori-kron-wis
3
feat: First draft of scPoli on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3824 opened May 23, 2026 by canergen Member Loading…
1
feat: scVI-X release on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3823 opened May 22, 2026 by canergen Member Loading…
28
feat: Add RESOLVI graph dataloader integration and benchmark CI on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3798 opened May 5, 2026 by ori-kron-wis Collaborator • Draft
@ori-kron-wis
2
feat: add shared memory for DDP data deduplication on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3754 opened Mar 19, 2026 by ori-kron-wis Collaborator • Draft
@ori-kron-wis
1
Feat: Asymmetric n_layers for encoder/decoder on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3702 opened Feb 8, 2026 by ori-kron-wis Collaborator Loading…
1
@ori-kron-wis
2
model: SENAVAE on-merge: backport to 1.5.x on-merge: backport to 1.5.x
#3571 opened Oct 22, 2025 by ori-kron-wis Collaborator Loading…
11
Fixes to pyro model initialisation & sampling [WIP] P1
#2695 opened Apr 7, 2024 by vitkl Contributor Loading…
@martinkim0
9
ProTip! Follow long discussions with comments:>50.